U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX22840320: Streptomyces rochei JK1 short reads
1 ILLUMINA (NextSeq 2000) run: 2.5M spots, 762.7M bases, 566Mb downloads

Design: The gDNA was extracted using standard methods from bacterial cells/mycelia from liquid culture. MD5_Checksums: JK1.IS350_Clean.1.fq.gz:a82256af9d20d35e2077975b2b800996; JK1.IS350_Clean.2.fq.gz: 7181da7d37c53f7008d6ef3fdba401df.
Submitted by: Jiangsu Academy of Agricultural Sciences
Study: Streptomyces rochei strain:JK1 Genome sequencing
show Abstracthide Abstract
Biopesticides are an attractive biotechnological alternative to conventional pesticides for soil-borne plant diseases. A screening strategy uncovered the Streptomyces rochei strain JK1 as a potent inhibitor of oomycete growth. The JK1 strain suppressed plant diseases caused by major oomycete pathogens. The culture filtrates of the JK1 strain inhibited oomycete growth in plate assays and could suppress oomycete-caused plant diseases. The macrolide secondary metabolite borrelidin was identified using HR-ESI-MS and NMR from growth-inhibitory fractions and inhibited both oomycete growth and plant diseases. The genome of the JK1 strain was used for the analysis of biosynthetic gene clusters (BGCs), of which there were approximately 30 BGCs regions predicted from the genome, including a BGC for borrelidin. The S. rochei JK1 strain is an important new bioresource for the control of oomycete-caused diseases.
Sample:
SAMN33980231 • SRS19820649 • All experiments • All runs
Library:
Name: JK1.IS350_Clean
Instrument: NextSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 2.5M spots, 762.7M bases, 566Mb
Run# of Spots# of BasesSizePublished
SRR271593192,542,307762.7M566Mb2023-12-09

ID:
30888124

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...